Package: bugphyzz 1.7.1

Samuel Gamboa

bugphyzz: A harmonized data resource and software for enrichment analysis of microbial physiologies

bugphyzz is an electronic database of standardized microbial annotations. It facilitates the creation of microbial signatures based on shared attributes, which are utilized for bug set enrichment analysis. The data also includes annotations imputed with ancestra state reconstruction methods.

Authors:Samuel Gamboa [aut, cre], Levi Waldron [aut], Kelly Eckenrode [aut], Jonathan Ye [aut], Jennifer Wokaty [aut], NCI [fnd]

bugphyzz_1.7.1.tar.gz
bugphyzz_1.7.1.zip(r-4.7)bugphyzz_1.7.1.zip(r-4.6)bugphyzz_1.7.1.zip(r-4.5)
bugphyzz_1.7.1.tgz(r-4.6-any)bugphyzz_1.7.1.tgz(r-4.5-any)
bugphyzz_1.7.1.tar.gz(r-4.7-any)bugphyzz_1.7.1.tar.gz(r-4.6-any)
bugphyzz_1.7.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bugphyzz/json (API)

# Install 'bugphyzz' in R:
install.packages('bugphyzz', repos = c('https://waldronlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/bugphyzz/issues

On CRAN:

Conda:

microbiomedatareproducibleresearchr01ca230551

5.40 score 6 stars 30 scripts 5 exports 39 dependencies

Last updated from:7b909fe05f. Checks:8 OK, 1 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK523
source / vignettesOK375
linux-release-x86_64OK502
macos-release-arm64OK327
macos-oldrel-arm64ERROR564
windows-develOK453
windows-releaseOK400
windows-oldrelOK431
wasm-releaseOK226

Exports:getTaxonSignaturesimportBugphyzzmakeSignaturesphysiologiesshowPhys

Dependencies:askpassBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11curlDBIdbplyrdplyrfastmapfilelockgenericsgluehttr2lifecyclemagrittrmemoiseopensslpillarpkgconfigpurrrR6rappdirsrlangRSQLiteS4Vectorsstringistringrsystibbletidyrtidyselectutf8vctrswithr

bugphyzz
Introduction | Data schema | Analysis and Stats | Installation | Import bugphyzz data | Create microbial signatures | Run a bug set enrichment analysis | Get signatures associated with a specific microbe | Session information
Rendered frombugphyzz.Rmdusingknitr::rmarkdown

Last update: 2024-06-27
Started: 2021-09-18

Sources
Rendered fromsources.Rmdusingknitr::rmarkdown

Last update: 2024-06-27
Started: 2024-06-27