Package: bugphyzz 1.7.1

Samuel Gamboa

bugphyzz: A harmonized data resource and software for enrichment analysis of microbial physiologies

bugphyzz is an electronic database of standardized microbial annotations. It facilitates the creation of microbial signatures based on shared attributes, which are utilized for bug set enrichment analysis. The data also includes annotations imputed with ancestra state reconstruction methods.

Authors:Samuel Gamboa [aut, cre], Levi Waldron [aut], Kelly Eckenrode [aut], Jonathan Ye [aut], Jennifer Wokaty [aut], NCI [fnd]

bugphyzz_1.7.1.tar.gz
bugphyzz_1.7.1.zip(r-4.7)bugphyzz_1.7.1.zip(r-4.6)bugphyzz_1.7.1.zip(r-4.5)
bugphyzz_1.7.1.tgz(r-4.6-any)bugphyzz_1.7.1.tgz(r-4.5-any)
bugphyzz_1.7.1.tar.gz(r-4.7-any)bugphyzz_1.7.1.tar.gz(r-4.6-any)
bugphyzz_1.7.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
bugphyzz/json (API)
NEWS

# Install 'bugphyzz' in R:
install.packages('bugphyzz', repos = c('https://waldronlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/bugphyzz/issues

On CRAN:

Conda:

microbiomedatareproducibleresearchr01ca230551

5.43 score 6 stars 32 scripts 5 exports 39 dependencies

Last updated from:7b909fe05f. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK444
source / vignettesOK372
linux-release-x86_64OK543
macos-release-arm64OK388
macos-oldrel-arm64OK490
windows-develOK448
windows-releaseOK482
windows-oldrelOK476
wasm-releaseOK213

Exports:getTaxonSignaturesimportBugphyzzmakeSignaturesphysiologiesshowPhys

Dependencies:askpassBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11curlDBIdbplyrdplyrfastmapfilelockgenericsgluehttr2lifecyclemagrittrmemoiseopensslpillarpkgconfigpurrrR6rappdirsrlangRSQLiteS4Vectorsstringistringrsystibbletidyrtidyselectutf8vctrswithr

bugphyzz

Samuel Gamboa, Levi Waldron

Rendered frombugphyzz.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2024-06-27
Started: 2021-09-18

Sources

Rendered fromsources.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2024-06-27
Started: 2024-06-27