Exploring HoverNet Features from imageFeatureTCGA using HistoImagePlotUpdated 1 months ago

Ilaria Billato

Rendered from HistoImagePlot.Rmd in HistoImagePlot 1.1.2.
imageTCGAutilsUpdated 2 months ago

Ilaria Billato, Eslam Abousamra

Rendered from imageTCGAutils.Rmd in imageTCGAutils 1.1.0.
Import HoverNet and ProvGigaPath features with imageFeatureTCGAUpdated 3 months ago

Ilaria Billato

Rendered from imageFeatureTCGA.Rmd in imageFeatureTCGA 1.1.0.
R-side access to published microbial signatures from BugSigDBUpdated 5 months ago

Ludwig Geistlinger, Jennifer Wokaty, and Levi Waldron

Rendered from bugsigdbr.Rmd in bugsigdbr 1.19.0.
R-side access to published microbial signatures from BugSigDBUpdated 5 months ago

Ludwig Geistlinger, Jennifer Wokaty, and Levi Waldron

Rendered from bugsigdbr.Rmd in bugsigdbr 1.19.0.
XeniumIO: Import 10X Genomics Xenium Analyzer DataUpdated 6 months ago

Marcel Ramos

Rendered from XeniumIO.Rmd in XeniumIO 1.5.0.
TENxIO: Import Single Cell Data FilesUpdated 6 months ago

Marcel Ramos

Rendered from TENxIO.Rmd in TENxIO 1.15.0.
TENxIO: Import Single Cell Data FilesUpdated 6 months ago

Marcel Ramos

Rendered from TENxIO.Rmd in TENxIO 1.15.0.
doppelgängRUpdated 7 months ago

Levi Waldron

Rendered from doppelgangR.Rmd in doppelgangR 1.41.0.
terraTCGAdata IntroductionUpdated 7 months ago

Marcel Ramos

Rendered from terraTCGAdata.Rmd in terraTCGAdata 1.17.1.
terraTCGAdata IntroductionUpdated 7 months ago

Marcel Ramos

Rendered from terraTCGAdata.Rmd in terraTCGAdata 1.17.1.
lefser: a metagenomic biomarker discovery toolUpdated 7 months ago

Asya Khleborodova, Sehyun Oh, Ludwig Geistlinger, and Levi Waldron

Rendered from lefser.Rmd in lefser 1.23.0.
lefser: a metagenomic biomarker discovery toolUpdated 7 months ago

Asya Khleborodova, Sehyun Oh, Ludwig Geistlinger, and Levi Waldron

Rendered from lefser.Rmd in lefser 1.23.0.
MultiAssayExperiment CheatsheetUpdated 7 months ago

MultiAssay Special Interest Group

Rendered from MultiAssayExperiment_cheatsheet.Rmd in MultiAssayExperiment 1.39.0.
MultiAssayExperiment CheatsheetUpdated 7 months ago

MultiAssay Special Interest Group

Rendered from MultiAssayExperiment_cheatsheet.Rmd in MultiAssayExperiment 1.39.0.
VisiumIO: Import 10X Genomics Visium Experiment DataUpdated 8 months ago

Marcel Ramos

Rendered from VisiumIO.Rmd in VisiumIO 1.9.2.
VisiumIO: Import 10X Genomics Visium Experiment DataUpdated 8 months ago

Marcel Ramos

Rendered from VisiumIO.Rmd in VisiumIO 1.9.2.
MultiAssayExperiment: The Integrative Bioconductor ContainerUpdated 10 months ago

MultiAssay Special Interest Group

Rendered from MultiAssayExperiment.Rmd in MultiAssayExperiment 1.39.0.
MultiAssayExperiment: The Integrative Bioconductor ContainerUpdated 10 months ago

MultiAssay Special Interest Group

Rendered from MultiAssayExperiment.Rmd in MultiAssayExperiment 1.39.0.
Using DelayedMatrix with MultiAssayExperimentUpdated 11 months ago

MultiAssay Special Interest Group

Rendered from UsingHDF5Array.Rmd in MultiAssayExperiment 1.39.0.
MultiAssayExperiment: Quick Start GuideUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from QuickStartMultiAssay.Rmd in MultiAssayExperiment 1.39.0.
Using DelayedMatrix with MultiAssayExperimentUpdated 11 months ago

MultiAssay Special Interest Group

Rendered from UsingHDF5Array.Rmd in MultiAssayExperiment 1.39.0.
MultiAssayExperiment: Quick Start GuideUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from QuickStartMultiAssay.Rmd in MultiAssayExperiment 1.39.0.
curatedTCGADataUpdated 11 months ago

Marcel Ramos

Rendered from curatedTCGAData.Rmd in curatedTCGAData 1.35.0.
cBioPortalData: Data Build ErrorsUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalDataErrors.Rmd in cBioPortalData 2.25.1.
cBioPortalData: API Reference Guide for DevsUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalRClient.Rmd in cBioPortalData 2.25.1.
cBioPortalData: User GuideUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalData.Rmd in cBioPortalData 2.25.1.
cgdsr to cBioPortalData: Migration TutorialUpdated 11 months ago

Karim Mezhoud & Marcel Ramos

Rendered from cgdsrMigration.Rmd in cBioPortalData 2.25.1.
cBioPortalData: Data Build ErrorsUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalDataErrors.Rmd in cBioPortalData 2.25.1.
cBioPortalData: API Reference Guide for DevsUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalRClient.Rmd in cBioPortalData 2.25.1.
cBioPortalData: User GuideUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalData.Rmd in cBioPortalData 2.25.1.
cgdsr to cBioPortalData: Migration TutorialUpdated 11 months ago

Karim Mezhoud & Marcel Ramos

Rendered from cgdsrMigration.Rmd in cBioPortalData 2.25.1.
TCGAutils: Helper functions for working with TCGA datasetsUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from TCGAutils.Rmd in TCGAutils 1.33.2.
TCGAutils: Helper functions for working with TCGA datasetsUpdated 11 months ago

Marcel Ramos & Levi Waldron

Rendered from TCGAutils.Rmd in TCGAutils 1.33.2.
G&T-seq Mouse Embryo (8-cell stage)Updated 12 months ago

Ludwig Geistlinger

Rendered from GTseq.Rmd in SingleCellMultiModal 1.25.3.
PBMCs profiled with the Chromium Single Cell Multiome ATAC + Gene Expression from 10xUpdated 12 months ago

Marcel Ramos Pérez, Al J Abadi, Ricard Argelaguet, Levi Waldron

Rendered from scMultiome.Rmd in SingleCellMultiModal 1.25.3.
scNMT Mouse GastrulationUpdated 12 months ago

Marcel Ramos Pérez

Rendered from scNMT.Rmd in SingleCellMultiModal 1.25.3.
SCoPE2: macrophage vs monocytesUpdated 12 months ago

Christophe Vanderaa

Rendered from SCoPE2.Rmd in SingleCellMultiModal 1.25.3.
Summarization and quantitative trait analysis of CNV rangesUpdated 1 years ago

Vinicius Henrique da Silva, Ludwig Geistlinger

Rendered from CNVRanger.Rmd in CNVRanger 1.29.1.
ECCITEseq Peripheral BloodUpdated 2 years ago

Dario Righelli

Rendered from ECCITEseq.Rmd in SingleCellMultiModal 1.25.3.
CITEseq Cord BloodUpdated 2 years ago

Dario Righelli

Rendered from CITEseq.Rmd in SingleCellMultiModal 1.25.3.
seqFISH Mouse Visual CortexUpdated 2 years ago

Dario Righelli

Rendered from seqFISH.Rmd in SingleCellMultiModal 1.25.3.
SingleCellMultiModal IntroductionUpdated 2 years ago

Marcel Ramos

Rendered from SingleCellMultiModal.Rmd in SingleCellMultiModal 1.25.3.
Recalibration of the Stammler_2016_16S_spikein datasetUpdated 2 years ago

Samuel D. Gamboa-Tuz

Rendered from recalibrare_spikein_data.Rmd in MicrobiomeBenchmarkData 1.15.1.
bugphyzzUpdated 2 years ago

Samuel Gamboa, Levi Waldron

Rendered from bugphyzz.Rmd in bugphyzz 1.7.1.
SourcesUpdated 2 years ago

Samuel Gamboa

Rendered from sources.Rmd in bugphyzz 1.7.1.
An introduction to GSEABaseUpdated 3 years ago

Martin Morgan, Paul Villafuerte

Rendered from GSEABase.Rmd in GSEABase 1.73.0.
Datasets in MicrobiomeBenchmarkDataUpdated 4 years ago

Samuel Gamboa

Rendered from datasets.Rmd in MicrobiomeBenchmarkData 1.15.1.
MicrobiomeBenchmarkDataUpdated 4 years ago

Samuel Gamboa, Levi Waldron

Rendered from MicrobiomeBenchmarkData.Rmd in MicrobiomeBenchmarkData 1.15.1.
Reproducible GSEA BenchmarkingUpdated 5 years ago

Ludwig Geistlinger

Rendered from GSEABenchmarkeR.Rmd in GSEABenchmarkeR 1.33.1.
Reproducible GSEA BenchmarkingUpdated 5 years ago

Ludwig Geistlinger

Rendered from GSEABenchmarkeR.Rmd in GSEABenchmarkeR 1.33.1.
HMP16SDataUpdated 5 years ago

Lucas Schiffer, Rimsha Azhar, Marcel Ramos, Ludwig Geistlinger, Levi Waldron

Rendered from HMP16SData.Rmd in HMP16SData 1.33.1.