Package: bugphyzz
Title: A harmonized data resource and software for enrichment analysis
        of microbial physiologies
Version: 1.7.1
Authors@R: c(
    person("Samuel", "Gamboa", , "Samuel.Gamboa.Tuz@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-6863-7943")),
    person("Levi", "Waldron", , "levi.waldron@sph.cuny.edu", role = "aut",
           comment = c(ORCID = "0000-0003-2725-0694")),
    person("Kelly", "Eckenrode", role = "aut"),
    person("Jonathan", "Ye", role = "aut"),
    person("Jennifer", "Wokaty", role = "aut"),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "R01CA230551"))
  )
Description: bugphyzz is an electronic database of standardized
        microbial annotations. It facilitates the creation of microbial
        signatures based on shared attributes, which are utilized for
        bug set enrichment analysis. The data also includes annotations
        imputed with ancestra state reconstruction methods.
biocViews: MicrobiomeData, ReproducibleResearch
License: Artistic-2.0
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Depends: R (>= 4.4)
Imports: dplyr, utils, purrr, stringr, tidyr, tidyselect,
        BiocFileCache, httr2, tools, S4Vectors
Suggests: DT, forcats, ggplot2, htmltools, knitr, rmarkdown,
        sessioninfo, testthat, EnrichmentBrowser,
        MicrobiomeBenchmarkData, mia, stats, rlang, limma, mgsub,
        methods, readr, crayon, tibble, magrittr, tidytext, BiocStyle
URL: https://github.com/waldronlab/bugphyzz
BugReports: https://github.com/waldronlab/bugphyzz/issues
Config/pak/sysreqs: libicu-dev libssl-dev
Repository: https://waldronlab.r-universe.dev
Date/Publication: 2026-04-29 21:16:59 UTC
RemoteUrl: https://github.com/waldronlab/bugphyzz
RemoteRef: HEAD
RemoteSha: 7b909fe05f2ee2f2ea1e6b09ebfc702c006504f2
NeedsCompilation: no
Packaged: 2026-07-03 14:15:36 UTC; root
Author: Samuel Gamboa [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6863-7943>),
  Levi Waldron [aut] (ORCID: <https://orcid.org/0000-0003-2725-0694>),
  Kelly Eckenrode [aut],
  Jonathan Ye [aut],
  Jennifer Wokaty [aut],
  NCI [fnd] (GrantNo.: R01CA230551)
Maintainer: Samuel Gamboa <Samuel.Gamboa.Tuz@gmail.com>