Package: HMP16SData 1.33.1

Lucas schiffer

HMP16SData: 16S rRNA Sequencing Data from the Human Microbiome Project

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

Authors:Lucas schiffer [aut, cre], Rimsha Azhar [aut], Marcel Ramos [ctb], Ludwig Geistlinger [ctb], Levi Waldron [aut], NCI [fnd]

HMP16SData_1.33.1.tar.gz
HMP16SData_1.33.1.zip(r-4.7)HMP16SData_1.33.1.zip(r-4.6)HMP16SData_1.33.1.zip(r-4.5)
HMP16SData_1.33.1.tgz(r-4.6-any)HMP16SData_1.33.1.tgz(r-4.5-any)
HMP16SData_1.33.1.tar.gz(r-4.7-any)HMP16SData_1.33.1.tar.gz(r-4.6-any)
HMP16SData_1.33.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
HMP16SData/json (API)
NEWS

# Install 'HMP16SData' in R:
install.packages('HMP16SData', repos = c('https://waldronlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/hmp16sdata/issues

Datasets:
  • dictionary - A data dictionary describing dbGaP metadata variables

On CRAN:

Conda:

experimentdataexperimenthubhomo_sapiens_datamicrobiomedatareproducibleresearchsequencingdatabioconductorbioconductor-packagehmpr01ca230551

5.67 score 10 stars 45 scripts 7 exports 100 dependencies

Last updated from:a9807c3ed9. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE443
source / vignettesOK394
linux-release-x86_64NOTE394
macos-release-arm64NOTE300
macos-oldrel-arm64NOTE328
windows-develNOTE334
windows-releaseNOTE350
windows-oldrelNOTE342
wasm-releaseOK197

Exports:%>%as_phyloseqattach_dbGaPkable_onetable_oneV13V35

Dependencies:abindAnnotationDbiAnnotationHubaskpassassertthatbase64encBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbslibcachemclicliprcpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrevaluateExperimentHubfarverfastmapfilelockfontawesomefsgenericsGenomicRangesgluehighrhmshtmltoolshttrhttr2IRangesjquerylibjsonlitekableExtraKEGGRESTknitrlabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsRColorBrewerreadrrlangrmarkdownRSQLiterstudioapiS4ArraysS4VectorssassscalesSeqinfoSparseArraystringistringrSummarizedExperimentsvglitesyssystemfontstextshapingtibbletidyrtidyselecttinytextzdbutf8vctrsviridisLitevroomwithrxfunxml2XVectoryaml

HMP16SData

Lucas Schiffer, Rimsha Azhar, Marcel Ramos, Ludwig Geistlinger, Levi Waldron

Rendered fromHMP16SData.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2021-05-18
Started: 2017-10-06