Package: HMP16SData
Type: Package
Title: 16S rRNA Sequencing Data from the Human Microbiome Project
Version: 1.33.1
Authors@R: c(
    person("Lucas", "schiffer", , "schiffer.lucas@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-3628-0326")),
    person("Rimsha", "Azhar", role = "aut"),
    person("Marcel", "Ramos", role = "ctb"),
    person("Ludwig", "Geistlinger", role = "ctb"),
    person("Levi", "Waldron", role = "aut"),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "R01CA230551"))
  )
Description: HMP16SData is a Bioconductor ExperimentData package of the
        Human Microbiome Project (HMP) 16S rRNA sequencing data for
        variable regions 1–3 and 3–5. Raw data files are provided in
        the package as downloaded from the HMP Data Analysis and
        Coordination Center. Processed data is provided as
        SummarizedExperiment class objects via ExperimentHub.
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1.0), SummarizedExperiment
Imports: AnnotationHub, ExperimentHub, S4Vectors, assertthat, dplyr,
        kableExtra, knitr, magrittr, methods, readr, stringr, tibble,
        utils
Suggests: Biobase, BiocCheck, BiocManager, BiocStyle, circlize,
        cowplot, dendextend, devtools, ggplot2, gridExtra, haven,
        phyloseq, rmarkdown, roxygen2, stats, testthat, tidyr
biocViews: ExperimentData, ExperimentHub, Homo_sapiens_Data,
        MicrobiomeData, ReproducibleResearch, SequencingData
VignetteBuilder: knitr
URL: https://github.com/waldronlab/HMP16SData
BugReports: https://github.com/waldronlab/HMP16SData/issues
RoxygenNote: 7.1.2
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://waldronlab.r-universe.dev
Date/Publication: 2026-05-14 20:45:39 UTC
RemoteUrl: https://github.com/waldronlab/HMP16SData
RemoteRef: HEAD
RemoteSha: a9807c3ed97f24c94d40fc4e62329a2d83a7e673
NeedsCompilation: no
Packaged: 2026-06-13 07:14:06 UTC; root
Author: Lucas schiffer [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3628-0326>),
  Rimsha Azhar [aut],
  Marcel Ramos [ctb],
  Ludwig Geistlinger [ctb],
  Levi Waldron [aut],
  NCI [fnd] (GrantNo.: R01CA230551)
Maintainer: Lucas schiffer <schiffer.lucas@gmail.com>