Package: doppelgangR 1.41.0

Levi Waldron

doppelgangR: Identify likely duplicate samples from genomic or meta-data

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).

Authors:Levi Waldron [aut, cre], Markus Reister [aut, ctb], Marcel Ramos [ctb]

doppelgangR_1.41.0.tar.gz
doppelgangR_1.41.0.zip(r-4.7)doppelgangR_1.41.0.zip(r-4.6)doppelgangR_1.41.0.zip(r-4.5)
doppelgangR_1.41.0.tgz(r-4.6-any)doppelgangR_1.41.0.tgz(r-4.5-any)
doppelgangR_1.41.0.tar.gz(r-4.7-any)doppelgangR_1.41.0.tar.gz(r-4.6-any)
doppelgangR_1.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
doppelgangR/json (API)
NEWS

# Install 'doppelgangR' in R:
install.packages('doppelgangR', repos = c('https://waldronlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lwaldron/doppelgangr/issues

Pkgdown/docs site:https://waldronlab.github.io

On BioConductor:doppelgangR-1.41.0(bioc 3.24)doppelgangR-1.40.0(bioc 3.23)

immunooncologyrnaseqmicroarraygeneexpressionqualitycontrolbioconductor-package

6.69 score 5 stars 33 scripts 19 exports 68 dependencies

Last updated from:94a7be768e. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE369
source / vignettesOK342
linux-release-x86_64NOTE346
macos-release-arm64NOTE272
macos-oldrel-arm64NOTE264
windows-develNOTE596
windows-releaseNOTE642
windows-oldrelNOTE640
wasm-releaseOK151

Exports:colFindercorFinderdoppelgangRdstmst.mleoutlierFinderphenoDistphenoFinderplotprintpstqstrstshowsmokingGunFinderst.mlesummaryvectorHammingDistvectorWeightedDist

Dependencies:abindannotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArraydigestedgeRfastmapformatRfutile.loggerfutile.optionsgenefiltergenericsGenomicRangesgluehttrimputeIRangesjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemnormtnlmeopensslpkgconfigpngR6rlangRSQLiteS4ArraysS4VectorsSeqinfosnowSparseArraystatmodSummarizedExperimentsurvivalsvasysvctrsXMLxtableXVector

doppelgängR

Levi Waldron

Rendered fromdoppelgangR.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2025-11-17
Started: 2016-03-17