Package: curatedOvarianData
Type: Package
Title: Clinically Annotated Data for the Ovarian Cancer Transcriptome
Version: 1.51.5
Date: 2026-10-03
Authors@R: c(
    person("Benjamin", "Ganzfried", role = "aut"),
    person("Markus", "Riester", role = "aut"),
    person("Steve", "Skates", role = "aut"),
    person("Victoria", "Wang", role = "aut"),
    person("Thomas", "Risch", role = "aut"),
    person("Benjamin", "Haibe-Kains", role = "aut"),
    person("Svitlana", "Tyekucheva", role = "aut"),
    person("Jie", "Ding", role = "aut"),
    person("Ina", "Jazic", role = "aut"),
    person("Michael", "Birrer", role = "aut"),
    person("Giovanni", "Parmigiani", role = "aut"),
    person("Curtis", "Huttenhower", role = "aut"),
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2725-0694")),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "U24CA289073"))
  )
Description: Manually curated human ovarian cancer ExpressionSet
        objects from 30 studies, with uniformly processed expression
        data and standardized clinical metadata including survival
        outcomes. Datasets are hosted on Zenodo and downloaded on first
        use, then cached locally with BiocFileCache. Includes a
        configurable script for rule-based creation of filtered dataset
        lists for meta-analysis.
Depends: Biobase, R (>= 4.6.0)
Imports: BiocFileCache, tools, utils
Suggests: BiocStyle, futile.logger, genefilter, knitr, logging,
        metafor, rmarkdown, testthat (>= 3.0.0), survival, sva, xtable
License: Artistic-2.0
VignetteBuilder: knitr
URL: https://github.com/waldronlab/curatedOvarianData
BugReports: https://github.com/waldronlab/curatedOvarianData/issues
biocViews: ExperimentData, ExpressionData, CancerData,
        OvarianCancerData, MicroarrayData, miRNAData, RNASeqData,
        ArrayExpress, GEO
BuildResaveData: no
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libssl-dev
Repository: https://waldronlab.r-universe.dev
Date/Publication: 2026-10-06 16:15:55 UTC
RemoteUrl: https://github.com/waldronlab/curatedOvarianData
RemoteRef: HEAD
RemoteSha: 9fe91924836da9da26686136741a4bfe6e4551bb
NeedsCompilation: no
Packaged: 2026-10-07 08:56:05 UTC; root
Author: Benjamin Ganzfried [aut],
  Markus Riester [aut],
  Steve Skates [aut],
  Victoria Wang [aut],
  Thomas Risch [aut],
  Benjamin Haibe-Kains [aut],
  Svitlana Tyekucheva [aut],
  Jie Ding [aut],
  Ina Jazic [aut],
  Michael Birrer [aut],
  Giovanni Parmigiani [aut],
  Curtis Huttenhower [aut],
  Levi Waldron [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2725-0694>),
  NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Levi Waldron <lwaldron.research@gmail.com>