{
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  "Title": "R-side access to published microbial signatures from BugSigDB",
  "Authors@R": "c(\nperson(\"Ludwig\", \"Geistlinger\", , \"ludwig.geistlinger@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Jennifer\", \"Wokaty\", , \"jennifer.wokaty@sph.cuny.edu\", role = \"aut\"),\nperson(\"Levi\", \"Waldron\", , \"lwaldron.research@gmail.com\", role = \"aut\"),\nperson(\"NCI\", role = \"fnd\",\ncomment = c(GrantNo. = \"R01CA230551\"))\n)",
  "Description": "The bugsigdbr package implements convenient access to\nbugsigdb.org from within R/Bioconductor. The goal of the\npackage is to facilitate import of BugSigDB data into\nR/Bioconductor, provide utilities for extracting microbe\nsignatures, and enable export of the extracted signatures to\nplain text files in standard file formats such as GMT.",
  "URL": "https://github.com/waldronlab/bugsigdbr",
  "BugReports": "https://github.com/waldronlab/bugsigdbr/issues",
  "License": "GPL-3",
  "VignetteBuilder": "knitr",
  "biocViews": "DataImport, GeneSetEnrichment, Metagenomics, Microbiome",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libicu-dev libssl-dev",
  "Repository": "https://waldronlab.r-universe.dev",
  "Date/Publication": "2026-05-14 21:17:50 UTC",
  "RemoteUrl": "https://github.com/waldronlab/bugsigdbr",
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  "NeedsCompilation": "no",
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    "User": "root"
  },
  "Author": "Ludwig Geistlinger [aut, cre],\nJennifer Wokaty [aut],\nLevi Waldron [aut],\nNCI [fnd] (GrantNo.: R01CA230551)",
  "Maintainer": "Ludwig Geistlinger <ludwig.geistlinger@gmail.com>",
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
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    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
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  "_homeurl": "https://github.com/waldronlab/bugsigdbr",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    "browseSignature",
    "browseTaxon",
    "extractTaxLevel",
    "getMetaSignatures",
    "getOntology",
    "getSignatures",
    "importBugSigDB",
    "restrictTaxLevel",
    "subsetByOntology",
    "writeGMT"
  ],
  "_help": [
    {
      "page": "browseSignature",
      "title": "Displaying BugSigDB signatures pages in a web browser",
      "topics": [
        "browseSignature"
      ]
    },
    {
      "page": "browseTaxon",
      "title": "Displaying BugSigDB taxon pages in a web browser",
      "topics": [
        "browseTaxon"
      ]
    },
    {
      "page": "extractTaxLevel",
      "title": "Extract specific taxonomic levels from a microbe signature",
      "topics": [
        "extractTaxLevel"
      ]
    },
    {
      "page": "getMetaSignatures",
      "title": "Obtain meta-signatures for a column of interest",
      "topics": [
        "getMetaSignatures"
      ]
    },
    {
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      "title": "Obtain the EFO and UBERON ontology",
      "topics": [
        "getOntology"
      ]
    },
    {
      "page": "getSignatures",
      "title": "Obtain microbe signatures from BugSigDB",
      "topics": [
        "getSignatures"
      ]
    },
    {
      "page": "importBugSigDB",
      "title": "Obtain published microbial signatures from bugsigdb.org",
      "topics": [
        "importBugSigDB"
      ]
    },
    {
      "page": "restrictTaxLevel",
      "title": "Restrict microbe signatures to specific taxonomic levels",
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        "restrictTaxLevel"
      ]
    },
    {
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      "title": "Ontology-based subsetting of BugSigDB signatures",
      "topics": [
        "subsetByOntology"
      ]
    },
    {
      "page": "writeGMT",
      "title": "Write microbe signatures to file in GMT format",
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      ]
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