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  "Description": "This package provides classes and methods to support Gene\nSet Enrichment Analysis (GSEA).",
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  "LazyLoad": "yes",
  "Collate": "utilities.R AAA.R AllClasses.R AllGenerics.R getObjects.R\nmethods-CollectionType.R methods-ExpressionSet.R\nmethods-GeneColorSet.R methods-GeneIdentifierType.R\nmethods-GeneSet.R methods-GeneSetCollection.R\nmethods-OBOCollection.R",
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        "GeneColorSet,character-method",
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      "page": "GeneSet-methods",
      "title": "Methods to construct GeneSet instances",
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        "GeneSet,BroadCollection-method",
        "GeneSet,character-method",
        "GeneSet,ExpressionSet-method",
        "GeneSet,GeneIdentifierType-method",
        "GeneSet,GOCollection-method",
        "GeneSet,missing-method",
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      "title": "Class \"GeneSet\"",
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        "&,GeneSet,character-method",
        "&,GeneSet,GeneSet-method",
        "collectionType",
        "collectionType,GeneSet-method",
        "collectionType<-",
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        "contributor",
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        "contributor<-",
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        "organism,GeneSet-method",
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        "&,GeneSetCollection,GeneSetCollection-method",
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    {
      "page": "GeneSetCollection-methods",
      "title": "Methods to construct GeneSetCollection instances",
      "topics": [
        "GeneSetCollection",
        "GeneSetCollection,character,AnnotationIdentifier,ChrlocCollection-method",
        "GeneSetCollection,character,AnnotationIdentifier,CollectionIdType-method",
        "GeneSetCollection,character,AnnotationIdentifier,CollectionType-method",
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        "GeneSetCollection,character,AnnotationIdentifier,PfamCollection-method",
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        "GeneSetCollection,ExpressionSet,missing,CollectionIdType-method",
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        "GeneSetCollection,ExpressionSet,missing,KEGGCollection-method",
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        "GeneSetCollection,GeneSet,missing,missing-method",
        "GeneSetCollection,GOAllFrame,missing,GOCollection-method",
        "GeneSetCollection,KEGGFrame,missing,KEGGCollection-method",
        "GeneSetCollection,list,missing,missing-method",
        "GeneSetCollection,missing,AnnotationIdentifier,CollectionIdType-method",
        "GeneSetCollection,missing,AnnotationIdentifier,CollectionType-method",
        "GeneSetCollection,missing,AnnotationIdentifier,GOCollection-method",
        "GeneSetCollection,missing,AnnotationIdentifier,KEGGCollection-method",
        "GeneSetCollection-methods"
      ]
    },
    {
      "page": "getOBOCollection",
      "title": "Read OBO-specified Gene Ontology Collections",
      "topics": [
        "getOBOCollection"
      ]
    },
    {
      "page": "goSlim-methods",
      "title": "Methods for Function goSlim in Package `GSEABase'",
      "topics": [
        "goSlim",
        "goSlim,ExpressionSet,GOCollection-method",
        "goSlim,GOCollection,GOCollection-method",
        "goSlim-methods"
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      "page": "getObjects",
      "title": "Read and write gene sets from Broad or GMT formats",
      "topics": [
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        "incidence,GeneSetCollection-method",
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      "source": "GSEABase.Rmd",
      "filename": "GSEABase.html",
      "title": "An introduction to GSEABase",
      "author": "Martin Morgan, Paul Villafuerte",
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      "headings": [
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