NEWS

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TENxIO 1.10.0

Bug fixes and minor improvements

• Removed projection from the show method
• Fixed a missing anchor in @inheritParams documentation
• The TENxH5 constructor properly validates remote files with .validateRanges
• imported slotNames from the methods package

TENxIO 1.8.0

New features

• The import method for h5 files now includes all rowData which typically includes "ID", "Symbol", and "Type" columns.

Bug fixes and minor improvements

• rownames are set to first column in the features.tsv.gz data (rownames for h5 files are determined by HDF5Array::TENxMatrix)
• TENxH5 now tests whether there is a /matrix/features/interval dataset in the h5 file. It sets ranges to NA_character_ when interval data is not found.

TENxIO 1.6.0

Bug fixes and minor improvements

• Use rowData from filtered SingleCellExperiment object (@MalteThodberg, #5)
• Add examples to TENxFileList documentation and improve constructor function

TENxIO 1.4.0

Bug fixes and minor improvements

• Skip unit tests when remote H5 access is not configured.

TENxIO 1.2.0

New features

• TENxTSV class has been added to handle compressed and uncompressed TSV files.

Bug fixes and minor improvements

• The import method for TENxFileList was returning a nested SummarizedExperiment within the SingleCellExperiment. The counts and assay(..., i="counts") methods should only return the bare Matrix rather than the embedded SummarizedExperiment (@dgastn, #2).

TENxIO 1.0.0

• Package released in Bioconductor!