# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "MultiAssayExperiment" in publications use:'
type: software
license: Artistic-2.0
title: 'MultiAssayExperiment: Software for the integration of multi-omics experiments
  in Bioconductor'
version: 1.31.5
doi: 10.1158/0008-5472.CAN-17-0344
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MultiAssayExperiment
abstract: Harmonize data management of multiple experimental assays performed on an
  overlapping set of specimens. It provides a familiar Bioconductor user experience
  by extending concepts from SummarizedExperiment, supporting an open-ended mix of
  standard data classes for individual assays, and allowing subsetting by genomic
  ranges or rownames. Facilities are provided for reshaping data into wide and long
  formats for adaptability to graphing and downstream analysis.
authors:
- family-names: Ramos
  given-names: Marcel
  email: marcel.ramos@sph.cuny.edu
  orcid: https://orcid.org/0000-0002-3242-0582
- family-names: Morgan
  given-names: Martin
- family-names: Carey
  given-names: Vincent J
- family-names: Waldron
  given-names: Levi
  email: lwaldron.research@gmail.com
preferred-citation:
  type: article
  title: Software For The Integration Of Multi-Omics Experiments In Bioconductor
  authors:
  - family-names: Ramos
    given-names: Marcel
    email: marcel.ramos@sph.cuny.edu
    orcid: https://orcid.org/0000-0002-3242-0582
  - family-names: Schiffer
    given-names: Lucas
  - family-names: Re
    given-names: Angela
  - family-names: Azhar
    given-names: Rimsha
  - family-names: Basunia
    given-names: Azfar
  - family-names: Rodriguez Cabrera
    given-names: Carmen
  - family-names: Chan
    given-names: Tiffany
  - family-names: Chapman
    given-names: Philip
  - family-names: Davis
    given-names: Sean
  - family-names: Gomez-Cabrero
    given-names: David
  - family-names: Culhane
    given-names: Aedin C.
  - family-names: Haibe-Kains
    given-names: Benjamin
  - family-names: Hansen
    given-names: Kasper
  - family-names: Kodali
    given-names: Hanish
  - family-names: Louis
    given-names: Marie S
  - family-names: Mer
    given-names: Arvind S
  - family-names: Reister
    given-names: Markus
  - family-names: Morgan
    given-names: Martin
  - family-names: Carey
    given-names: Vincent J
  - family-names: Waldron
    given-names: Levi
    email: lwaldron.research@gmail.com
  journal: Cancer Research
  year: '2017'
  volume: '77'
  issue: '21'
  doi: 10.1158/0008-5472.CAN-17-0344
  url: https://cancerres.aacrjournals.org/content/77/21/e39
  start: e39-42
repository: https://waldronlab.r-universe.dev
repository-code: https://github.com/waldronlab/MultiAssayExperiment
commit: 6d3f576710a9d281c454d9b7ad3d9b360b335683
url: http://waldronlab.io/MultiAssayExperiment/
date-released: '2024-08-22'
contact:
- family-names: Ramos
  given-names: Marcel
  email: marcel.ramos@sph.cuny.edu
  orcid: https://orcid.org/0000-0002-3242-0582