Package: MicrobiomeBenchmarkData
Title: Datasets for benchmarking in microbiome research
Version: 1.15.1
Description: The MicrobiomeBenchmarkData package provides functionality
        to access microbiome datasets suitable for benchmarking. These
        datasets have some biological truth, which allows to have
        expected results for comparison. The datasets come from various
        published sources and are provided as TreeSummarizedExperiment
        objects. Currently, only datasets suitable for benchmarking
        differential abundance methods are available.
Authors@R: c(
    person("Samuel", "Gamboa", , "Samuel.Gamboa.Tuz@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-6863-7943")),
    person("Levi", "Waldron", role = "aut",
           comment = c(ORCID = "0000-0003-2725-0694")),
    person("Marcel", "Ramos", role = "ctb"),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "R01CA230551"))
  )
License: Artistic-2.0
LazyData: false
Depends: R (>= 4.2), SummarizedExperiment, TreeSummarizedExperiment
Imports: BiocFileCache, tools, S4Vectors, ape, utils
Suggests: rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0), mia,
        ggplot2, tidyr, dplyr, magrittr, tibble, purrr
biocViews: ExperimentData, MicrobiomeData, ReproducibleResearch,
        SequencingData
BugReports: https://github.com/waldronlab/MicrobiomeBenchmarkData/issues
URL: https://github.com/waldronlab/MicrobiomeBenchmarkData,
        http://waldronlab.io/MicrobiomeBenchmarkData/
BiocType: ExperimentData
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://waldronlab.r-universe.dev
Date/Publication: 2026-04-29 20:51:01 UTC
RemoteUrl: https://github.com/waldronlab/MicrobiomeBenchmarkData
RemoteRef: HEAD
RemoteSha: ed900aa65c5c5000f27d41236eb51fada07d72e7
NeedsCompilation: no
Packaged: 2026-06-13 06:20:08 UTC; root
Author: Samuel Gamboa [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6863-7943>),
  Levi Waldron [aut] (ORCID: <https://orcid.org/0000-0003-2725-0694>),
  Marcel Ramos [ctb],
  NCI [fnd] (GrantNo.: R01CA230551)
Maintainer: Samuel Gamboa <Samuel.Gamboa.Tuz@gmail.com>