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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GSEABenchmarkeR" in publications use:'
type: software
license: Artistic-2.0
title: 'GSEABenchmarkeR: Reproducible GSEA Benchmarking'
version: 1.33.1
doi: 10.1093/bib/bbz158
identifiers:
- type: doi
  value: 10.32614/CRAN.package.GSEABenchmarkeR
abstract: The GSEABenchmarkeR package implements an extendable framework for reproducible
  evaluation of set- and network-based methods for enrichment analysis of gene expression
  data. This includes support for the efficient execution of these methods on comprehensive
  real data compendia (microarray and RNA-seq) using parallel computation on standard
  workstations and institutional computer grids. Methods can then be assessed with
  respect to runtime, statistical significance, and relevance of the results for the
  phenotypes investigated.
authors:
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig.geistlinger@gmail.com
- family-names: Csaba
  given-names: Gergely
- family-names: Zimmer
  given-names: Ralf
- family-names: Waldron
  given-names: Levi
preferred-citation:
  type: article
  title: Toward a gold standard for benchmarking gene set enrichment analysis
  authors:
  - family-names: Geistlinger
    given-names: Ludwig
    email: ludwig.geistlinger@gmail.com
  - family-names: Csaba
    given-names: Gergely
  - family-names: Santarelli
    given-names: Mara
  - family-names: Ramos
    given-names: Marcel
  - family-names: Schiffer
    given-names: Lucas
  - family-names: Law
    given-names: Charity
  - family-names: Turaga
    given-names: Nitesh
  - family-names: Davis
    given-names: Sean
  - family-names: Carey
    given-names: Vincent
  - family-names: Morgan
    given-names: Martin
  - family-names: Zimmer
    given-names: Ralf
  - family-names: Waldron
    given-names: Levi
  year: '2020'
  journal: Briefings in Bioinformatics
  doi: 10.1093/bib/bbz158
repository: https://waldronlab.r-universe.dev
repository-code: https://github.com/waldronlab/GSEABenchmarkeR
commit: 21b3ef8ac091f8d7864bc94a32ff828a45b5754f
url: https://github.com/waldronlab/GSEABenchmarkeR
date-released: '2026-05-14'
contact:
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig.geistlinger@gmail.com